PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G020100.3
Common NameB456_011G020100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 247aa    MW: 27323.7 Da    PI: 8.6097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G020100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.3e-061381751254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Gorai.011G020100.3 138 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 175
                         67788899********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.087126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-12136189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-9136195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-6136179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDSTYECPPT LLFDTDPQQQ SVFNNNNQSI NYMSCSSLSS SPSWPKLAPP LTTKQQQQPP  60
VGTGTLQFSN NTSFWNASAT GNILPSLYEE KPNCPTLTTK TNIEEVRKNS NSKKASNETP  120
LKRPRLETPS PLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQVN  180
VLSTPYMKQA AASIQQSTDK LKDHQEGPKQ DLRSRGLCLV PVSSTFPVAN ETPADFWTPT  240
FGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472301e-54EF147230.1 Populus trichocarpa clone WS01229_K02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457544.10.0PREDICTED: transcription factor bHLH112-like
SwissprotQ94JL31e-63BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A0D2VH400.0A0A0D2VH40_G
STRINGVIT_00s0274g00070.t013e-94(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.12e-64bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]